PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA7839
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family C2H2
Protein Properties Length: 144aa    MW: 15758.5 Da    PI: 9.7886
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA7839genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.84e-05112135123
                               EEETTTTEEESSHHHHHHHHHH.T CS
                   zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                               y+Cp C+k  +++ ++ +H +  H
  Tp57577_TGAC_v2_mRNA7839 112 YTCPFCNKKVTTSQLFASHVKWnH 135
                               9*******************9886 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501578.6112141IPR007087Zinc finger, C2H2
PROSITE patternPS000280114136IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 144 aa     Download sequence    Send to blast
MNIDKLREWA NGNNTITKTC DHSPSSSATN KFGSHAAGIR KAMQILESQF ALSDNPDLFG  60
GSSSHPQEPI NAIATNGDEF GEGDNNNRKK KSPKKNDDGS IHSIPCQKYG PYTCPFCNKK  120
VTTSQLFASH VKWNHHKDGK KKK*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G18490.11e-09C2H2-like zinc finger protein